It turns out that Robert McNamara did, too. I knew nothing of the Stewart study while I was reporting on My Lai in late 1969, but I did learn that McNamara had been put on notice years earlier about the bloody abuses in central Vietnam. After the first of my My Lai stories was published, Jonathan Schell, a young writer for The New Yorker, who in 1968 had published a devastating account for the magazine of the incessant bombing in Quang Ngai and a nearby province, called me. (Schell died last year.) His article—which later became a book, “The Military Half”—demonstrated, in essence, that the U.S. military, convinced that the Vietcong were entrenched in central Vietnam and attracting serious support, made little distinction between combatants and noncombatants in the area that included My Lai.

Schell had returned from South Vietnam, in 1967, devastated by what he had seen. He came from an eminent New York family, and his father, a Wall Street attorney and a patron of the arts, was a neighbor, in Martha’s Vineyard, of Jerome Wiesner, the former science adviser to President John F. Kennedy. Wiesner, then the provost of the Massachusetts Institute of Technology, was also involved with McNamara in a project to build an electronic barrier that would prevent the North Vietnamese from sending matériel south along the Ho Chi Minh Trail. (The barrier was never completed.) Schell told Wiesner what he had seen in Vietnam, and Wiesner, who shared his dismay, arranged for him to talk with McNamara.

Soon afterward, Schell discussed his observations with McNamara, in Washington. Schell told me that he was uncomfortable about giving the government a report before writing his article, but he felt that it had to be done. McNamara agreed that their meeting would remain secret, and he said that he would do nothing to impede Schell’s work. He also provided Schell with an office in the Pentagon where he could dictate his notes. Two copies were made, and McNamara said that he would use his set to begin an inquiry into the abuses that Schell had described.

Schell’s story was published early the next year. He heard nothing more from McNamara, and there was no public sign of any change in policy. Then came my articles on My Lai, and Schell called McNamara, who had since left the Pentagon to become president of the World Bank. He reminded him that he had left him a detailed accounting of atrocities in the My Lai area. Now, Schell told me, he thought it was important to write about their meeting. McNamara said that they had agreed it was off the record and insisted that Schell honor the commitment. Schell asked me for advice. I wanted him to do the story, of course, but told him that if he really had made an off-the-record pact with McNamara he had no choice but to honor it.

Schell kept his word. In a memorial essay on McNamara in The Nation, in 2009, he described his visit to McNamara but did not mention their extraordinary agreement. Fifteen years after the meeting, Schell wrote, he learned from Neil Sheehan, the brilliant war reporter for the United Press International*, the Times and The New Yorker, and the author of “A Bright Shining Lie,” that McNamara had sent Schell’s notes to Ellsworth Bunker, the American Ambassador in Saigon. Apparently unknown to McNamara, the goal in Saigon was not to investigate Schell’s allegations but to discredit his reporting and do everything possible to prevent publication of the material.

A few months after my newspaper articles appeared, Harper’s published an excerpt from a book I’d been writing, to be titled “My Lai 4: A Report on the Massacre and Its Aftermath.” The excerpt provided a far more detailed account of what had happened, emphasizing how the soldiers in Lieutenant Calley’s company had become brutalized in the months leading up to the massacre. McNamara’s twenty-year-old son, Craig, who opposed the war, called me and said that he had left a copy of the magazine in his father’s sitting room. He later found it in the fireplace. After McNamara left public life, he campaigned against nuclear arms and tried to win absolution for his role in the Vietnam War. He acknowledged in a 1995 memoir, “In Retrospect: The Tragedy and Lessons of Vietnam,” that the war had been a “disaster,” but he rarely expressed regrets about the damage that was done to the Vietnamese people and to American soldiers like Paul Meadlo. “I’m very proud of my accomplishments, and I’m very sorry that in the process of accomplishing things I’ve made errors,” he told the filmmaker Errol Morris in “The Fog of War,” a documentary released in 2003.

Declassified documents from McNamara’s years in the Pentagon reveal that McNamara repeatedly expressed skepticism about the war in his private reports to President Johnson. But he never articulated any doubt or pessimism in public. Craig McNamara told me that on his deathbed his father “said he felt that God had abandoned him.” The tragedy was not only his. 

An earlier version of this article misstated the organization for which Neil Sheehan was a reporter.

Seymour M. Hersh wrote his first piece for The New Yorker in 1971 and has been a regular contributor to the magazine since 1993.

My Lai Revisited: 47 Years Later, Seymour Hersh Travels to Vietnam Site of U.S. Massacre He Exposed